OT and monocultures: Gene Expression
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The CRC-TME interaction atlas: Home
Networks
Receptor-ligand interactions in OTs
Transcriptional regulatory networks in colon/CRC epithelium
Comparison of OTs to cultured cells
Gene Expression
Differential Expression
PDOs co-cultured with TME cells
Gene Expression
Differential Expression
Enriched Pathways
Cells to use:
OT vs Monocultures
Original tumors
Monocultures
Patients:
VB
NS
J5
AA
8V
NW
MS
XT
GQ
PQ
LQ
FV
WZ
0C
OU
EB
LZ
5Z
57
56
RT
DZ
TF
7O
VQ.T
VQ.O
4U
6M
Type of plot:
Gene expression
Metadata
Metadata to plot:
nCount_RNA
nFeature_RNA
patient
celltype
type
CMS
culture
medium
oxygen
matrix
metastasis
percent_mito
Gene(s) to plot:
Categories to use:
patient
celltype
type
CMS
culture
medium
oxygen
matrix
metastasis
Violin plot
Plot higher values on top
Label
Show axis
Show legend
Point size
Label size
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