CRC+TME reconstruction vs Original tumor: LFC-LFC plots
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The CRC-TME interaction atlas: Home
Networks
Receptor-ligand interactions in OTs
Transcriptional regulatory networks in colon/CRC epithelium
Comparison of OTs to cultured cells
Gene Expression
Differential Expression
PDOs co-cultured with TME cells
Gene Expression
Differential Expression
Enriched Pathways
Data selection
Cell type to analyze:
EP
TC
CAF
Patients averaged for differential expression of:
original tumor (OT) vs monoculture:
AA
NW
GQ
PQ
FV
WZ
0C
OU
EB
5Z
RT
DZ
TF
NS
VQ.0T
VQ.0O
XT
patient derived organoid (PDO) + TME vs monoculture (MC):
TF
DZ
RT
FV
GQ
MS
NW
NS
VB
VQ.0O
VQ.0T
Statistical testing
Fold change threshold for OT vs MC:
P-value threshold for OT vs MC:
Fold change threshold for PDO+TME vs MC:
P-value threshold for PDO+TME vs MC:
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Graphic parameters
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Repel gene labels
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